Highlighted Publications
Xin R*, Gao Y*, Gao Y, Wang R, Kadash-Edmondson KE, Liu B, Wang Y, Lin L, Xing Y. (2021) isoCirc catalogs full-length circular RNA isoforms in human transcriptomes. Nature Communications, 12:266. (*joint first authors)
Phillips JW*, Pan Y*, Tsai BL, Xie Z, Demirdjian L, Xiao W, Yang HT, Zhang Y, Lin CH, Cheng D, Hu Q, Liu S, Black DL, Witte ON+, Xing Y+. (2020) Pathway-guided analysis identifies Myc-dependent alternative pre-mRNA splicing in aggressive prostate cancers. PNAS, 117(10):5269-79. (+joint corresponding authors; *joint first authors)
Zhang Z*, Pan Z*, Ying Y, Xie Z, Adhikari S, Phillips J, Carstens RP, Black DL, Wu Y, Xing Y. (2019) Deep learning-augmented RNA-seq analysis of transcript splicing. Nature Methods, 16:307-10. (*joint first authors)
Molinie B*, Wang J*, Lim KS, Hillebrand R, Lu ZX, Van Wittenberghe N, Howard BD, Daneshvar K, Mullen A, Dedon P, Xing Y+, Giallourakis CC.+ (2016) m6A level and isoform characterization sequencing (m6A-LAIC-seq) reveals the census and complexity of the m6A epitranscriptome. Nature Methods, 13(8):692-8. (+joint corresponding authors; *joint first authors).
Shen S*, Park JW*, Lu ZX, Lin L, Henry MD, Wu YN, Zhou Q, Xing Y. (2014) rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. PNAS, 111(51):E5593-601. (*joint first authors).